How to Display Node Attributes on a Networkx Graph Visualized with Pyvis?
I Would Like to Display Node Attributes When Visualized with Pyvis. Import Networkx Import Obonet G = Obonet. Read_Obo(') # Create Smaller Subgraph H = Nx...
I would like to display node attributes when visualized with pyvis.
import networkx
import obonet
G = obonet.read_obo(')
# Create smaller subgraph
H = nx.ego_graph(G, 'CHEBI:36464', 15)
H.nodes['CHEBI:24669']
>>> {'name': 'p-block molecular entity', 'subset': ['3_STAR'], 'def': '"Amain group molecular entity that contains one or more atoms of a p-block element." []', 'is_a': ['CHEBI:33579'], 'relationship': ['has_part CHEBI:33560']}
This is the data that I would like to show. For example name.
Then I plot the graph using pyvis:
from pyvis.network import Network
nt = Network('1500px', '1500px', notebook=True)
nt.from_nx(H)
nt.show('H.html')
And this is how the graph looks:
As you can see only the node labels are shown.
1 Answer
In order to get your node attribute displayed with the node labels, you can create a new 'label' key in your node dictionary and pass it the value of the attribute. See code below with the lite version of the dataset you provided:
import networkx as nx
import obonet
from pyvis.network import Network
G = obonet.read_obo(')
# Create smaller subgraph
H = nx.ego_graph(G, 'CHEBI:36464', 15)
for n in H.nodes(data=True):
n[1]['label']=n[0]+' '+n[1]['name'] #concatenate label of the node with its attribute
nt = Network('1500px', '1500px', notebook=True)
nt.from_nx(H)
nt.show('network.html')
And the output gives:
If instead, you'd like to visualize the node attribute by hoovering over the node, you can use:
import networkx as nx
import obonet
from pyvis.network import Network
G = obonet.read_obo(')
# Create smaller subgraph
H = nx.ego_graph(G, 'CHEBI:36464', 15)
for n in H.nodes(data=True):
n[1]['title']=n[1]['name'] #add hoovering to graph
nt = Network('1500px', '1500px', notebook=True)
nt.from_nx(H)
nt.show('network.html')
Marcus Vance is a cybersecurity auditor and technology writer dedicated to educating the public about online safety, data privacy regulations, enterprise security, and emerging cyber threats.
