Segmentation Violation Detected on Run
I'm New to Matlab and I Get the Following Crash Information When Running Gistic2 Based on Mcr. No Problem Running That Algorithm in Other Machine We Are Using...
I'm new to MATLAB and I get the following crash information when running GISTIC2 based on MCR. No problem running that algorithm in other machine we are using.
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Segmentation violation detected at Thu Jul 8 23:01:05 2021
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Configuration:
Crash Decoding : Disabled
Current Visual : 0x21 (class 4, depth 24)
Default Encoding : UTF-8
GNU C Library : 2.31 stable
MATLAB Architecture: glnxa64
MATLAB Root : /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83
MATLAB Version : 8.3.0.532 (R2014a)
Operating System : Linux 5.8.0-59-generic #66~20.04.1-Ubuntu SMP Thu Jun 17 11:14:10 UTC 2021 x86_64
Processor ID : x86 Family 143 Model 96 Stepping 1, AuthenticAMD
Virtual Machine : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
Window System : The X.Org Foundation (12009000), display :0
Fault Count: 1
Abnormal termination:
Segmentation violation
Register State (from fault):
RAX = 0000000000000000 RBX = 00007f7790b2c190
RCX = 0000000000000000 RDX = 0000000000000000
RSP = 00007f77f2becde8 RBP = 00007f77ec0376c0
RSI = 000000003e07c725 RDI = 0000000000000000
R8 = 0000000000000007 R9 = 00312d3634363031
R10 = 00007f77f2becc70 R11 = 0000000000000000
R12 = 0000000000000000 R13 = 00007f77f2bed180
R14 = 0000000000000000 R15 = 0000000000000000
RIP = 00007f7807063675 EFL = 0000000000010283
CS = 0033 FS = 0000 GS = 0000
Stack Trace (from fault):
[ 0] 0x00007f7807063675 /lib/x86_64-linux-gnu/libc.so.6+01619573
[ 1] 0x00007f77f588ec18 /lib/x86_64-linux-gnu/libX11.so.6+00134168 XLoadQueryFont+00000056
[ 2] 0x00007f77f870adf0 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00261616
[ 3] 0x00007f77f870baae /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00264878
[ 4] 0x00007f77f870bd29 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwuix.so+00265513
[ 5] 0x00007f77f8e5d143 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00663875 _Z21wm_SetUnadjWindowFontP10WinRec_tagP6mxFont+00000083
[ 6] 0x00007f77f8e5d74b /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00665419 _Z22wm_GetDeviceFontExtentP10WinRec_tagP6mxFontPKcdP6mwrect+00000315
[ 7] 0x00007f77f8e78fff /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00778239 uiGetDeviceFont+00000815
[ 8] 0x00007f77f8e79171 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00778609 _Z15uiSetWindowFontP10WinRec_tagP6mxFont+00000017
[ 9] 0x00007f77f8e5d013 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00663571 _Z16wm_SetWindowFontP10WinRec_tagP6mxFont+00000083
[ 10] 0x00007f77a5d81195 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05001621
[ 11] 0x00007f77f8e9489d /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00891037 _ZN11gui_objects10tickpicker12nicefyLimitsERNS0_14AxisDescriptorENS0_8AxisTypeE+00000173
[ 12] 0x00007f77f8e94cc3 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwgui.so+00892099 _ZN11gui_objects10tickpicker12nicefyLimitsERNS0_14AxisDescriptorE+00000019
[ 13] 0x00007f77a5d816d9 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05002969
[ 14] 0x00007f77a5ce57df /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+04364255
[ 15] 0x00007f77a5cd0b1f /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+04279071
[ 16] 0x00007f77a5dd4740 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05343040
[ 17] 0x00007f77a5dd427c /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05341820
[ 18] 0x00007f77a5dc72b0 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05288624
[ 19] 0x00007f77f746bded /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwudd.so+00634349
[ 20] 0x00007f77f7465153 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwudd.so+00606547 _ZN11UDInterface15notifyPropEventEP16UDDatabaseClientPK10UDPropInfoPK11UDEventInfoP7UDEvent+00000115
[ 21] 0x00007f77f7468671 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwudd.so+00620145 _ZN11UDInterface4setEEP16UDDatabaseClientP10UDPropInfoPvP13UDErrorStatus+00000593
[ 22] 0x00007f77a5dd15b6 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05330358
[ 23] 0x00007f77a5dcbadd /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05307101
[ 24] 0x00007f77a5dca0d0 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05300432
[ 25] 0x00007f77a5db06f5 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05195509
[ 26] 0x00007f77a5dbdfd0 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05251024
[ 27] 0x00007f77a5db7408 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05223432
[ 28] 0x00007f77a5dbe432 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05252146
[ 29] 0x00007f77a5dc3113 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhg.so+05271827 hgSet+00001107
[ 30] 0x00007f77a6c80742 /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwhgbuiltins.so+00345922
...
[125] 0x00007f77fba703bf /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwmcr.so+00365503
[126] 0x00007f77fba6b28f /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/bin/glnxa64/libmwmcr.so+00344719
[127] 0x00007f78070d3609 /lib/x86_64-linux-gnu/libpthread.so.0+00038409
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Thank you for your help.** This crash report has been saved to disk as /home/lcj/matlab_crash_dump.29508-1 **
Segmentation fault (core dumped)
After renaming the libstdc++.so.6 library to libstdc++.so.6.old in ~/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83/sys/os/glnxa64, I got the following crash information.
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Segmentation violation detected at Sat Jul 10 23:22:39 2021
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Configuration:
Crash Decoding : Disabled
Current Visual : 0x21 (class 4, depth 24)
Default Encoding : UTF-8
GNU C Library : 2.31 stable
MATLAB Architecture: glnxa64
MATLAB Root : /home/lcj/Biosoft/GISTIC2/MATLAB_Compiler_Runtime/v83
MATLAB Version : 8.3.0.532 (R2014a)
Operating System : Linux 5.8.0-59-generic #66~20.04.1-Ubuntu SMP Thu Jun 17 11:14:10 UTC 2021 x86_64
Processor ID : x86 Family 143 Model 96 Stepping 1, AuthenticAMD
Virtual Machine : Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
Window System : The X.Org Foundation (12009000), display :0
Fault Count: 1
Abnormal termination:
Segmentation violation
Register State (from fault):
RAX = 0000000000000000 RBX = 00007f26c0b99880
RCX = 0000000000000000 RDX = 0000000000000000
RSP = 00007f2720dcede8 RBP = 00007f271c0376c0
RSI = 000000003e07c725 RDI = 0000000000000000
R8 = 0000000000000007 R9 = 00312d3634363031
R10 = 00007f2720dcec70 R11 = 0000000000000000
R12 = 0000000000000000 R13 = 00007f2720dcf180
R14 = 0000000000000000 R15 = 0000000000000000
RIP = 00007f2735246675 EFL = 0000000000010283
CS = 0033 FS = 0000 GS = 0000
Stack Trace (from fault):
Caught "std::exception" Exception message is:
FatalException
Error:FatalException
Any clues to solve this errors?